{ "$schema": "http://json-schema.org/draft-07/schema#", "$id": "https://pivograph.com/schemas/project/v1.json", "title": "PivoGraph project document (schemaVersion 1)", "description": "A PivoGraph .pivograph project file: data tables with their graph documents, analyses and annotations. Plain UTF-8 JSON. Unknown keys are rejected; use `usermeta` for tool-specific data. 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"^(?:(?:\\d\\d[2468][048]|\\d\\d[13579][26]|\\d\\d0[48]|[02468][048]00|[13579][26]00)-02-29|\\d{4}-(?:(?:0[13578]|1[02])-(?:0[1-9]|[12]\\d|3[01])|(?:0[469]|11)-(?:0[1-9]|[12]\\d|30)|(?:02)-(?:0[1-9]|1\\d|2[0-8])))T(?:(?:[01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(?:\\.\\d+)?(?:Z|([+-](?:[01]\\d|2[0-3]):[0-5]\\d)))$" }, "meta": { "allOf": [ { "$ref": "#/definitions/ProjectMeta" } ] }, "usermeta": { "allOf": [ { "$ref": "#/definitions/Usermeta" } ] }, "view": { "allOf": [ { "$ref": "#/definitions/ViewHint" } ] }, "tables": { "maxItems": 200, "type": "array", "items": { "$ref": "#/definitions/Table" } } }, "required": [ "format", "schemaVersion", "tables" ], "additionalProperties": false, "definitions": { "GeneratorInfo": { "type": "object", "properties": { "name": { "type": "string", "maxLength": 200 }, "version": { "type": "string", "maxLength": 300 }, "url": { "type": "string", "maxLength": 500 } }, "required": [ "name", "version" ], "additionalProperties": false }, "ProjectMeta": { "type": "object", "properties": { "title": { "type": "string", "maxLength": 200 }, "description": { "type": "string", "maxLength": 2000 }, "authors": { "maxItems": 50, "type": "array", "items": { "type": "string", "maxLength": 200 } }, "license": { "type": "string", "maxLength": 2000 }, "source": { "type": "string", "maxLength": 2000 }, "keywords": { "maxItems": 50, "type": "array", "items": { "type": "string", "maxLength": 200 } } }, "required": [ "title" ], "additionalProperties": false }, "Usermeta": { "type": "object", "propertyNames": { "type": "string" }, "additionalProperties": { "$ref": "#/definitions/JsonValue" } }, "JsonValue": { "anyOf": [ { "type": "string" }, { "type": "number" }, { "type": "boolean" }, { "type": "null" }, { "type": "array", "items": { "$ref": "#/definitions/JsonValue" } }, { "type": "object", "propertyNames": { "type": "string" }, "additionalProperties": { "$ref": "#/definitions/JsonValue" } } ] }, "ViewHint": { "type": "object", "properties": { "activeTableId": { "type": "string", "minLength": 1, "maxLength": 128, "description": "Opaque identifier; must be unique within its scope in the document." }, "workspaceView": { "type": "string", "enum": [ "table", "graph" ] } }, "additionalProperties": false }, "Table": { "type": "object", "properties": { "id": { "type": "string", "minLength": 1, "maxLength": 128, "description": "Opaque identifier; must be unique within its scope in the document." }, "name": { "type": "string", "maxLength": 200 }, "format": { "type": "string", "enum": [ "xy", "column", "grouped", "nested", "contingency", "survival", "partsOfWhole", "multipleVariables" ] }, "replicates": { "type": "integer", "minimum": 1, "maximum": 64 }, "x": { "maxItems": 200000, "type": "array", "items": { "type": [ "number", "null" ] } }, "rowLabels": { "maxItems": 200000, "type": "array", "items": { "type": "string", "maxLength": 200 } }, "dataSets": { "minItems": 1, "maxItems": 500, "type": "array", "items": { "$ref": "#/definitions/DataSet" } }, "variableTypes": { "type": "object", "propertyNames": { "type": "string" }, "additionalProperties": { "type": "string", "enum": [ "continuous", "categorical", "label" ] } }, "columnWidths": { "type": "object", "propertyNames": { "type": "string" }, "additionalProperties": { "type": "number", "minimum": 0 } }, "derivedFrom": { "allOf": [ { "$ref": "#/definitions/DerivedFrom" } ] }, "graph": { "allOf": [ { "$ref": "#/definitions/GraphDocument" } ] }, "analyses": { "maxItems": 200, "type": "array", "items": { "$ref": "#/definitions/AnalysisInstance" } }, "annotations": { "maxItems": 2000, "type": "array", "items": { "$ref": "#/definitions/Annotation" } }, "titles": { "allOf": [ { "$ref": "#/definitions/TitlesState" } ] }, "usermeta": { "allOf": [ { "$ref": "#/definitions/Usermeta" } ] } }, "required": [ "format" ], "additionalProperties": false }, "DataSet": { "type": "object", "properties": { "name": { "type": "string", "minLength": 1, "maxLength": 200 }, "values": { "maxItems": 200000, "type": "array", "items": { "maxItems": 64, "type": "array", "items": { "$ref": "#/definitions/CellValue" } } } }, "required": [ "name", "values" ], "additionalProperties": false }, "CellValue": { "anyOf": [ { "type": "number" }, { "type": "string", "maxLength": 1000 }, { "type": "null" } ] }, "DerivedFrom": { "type": "object", "properties": { "sourceTableId": { "type": "string", "minLength": 1, "maxLength": 128, "description": "Opaque identifier; must be unique within its scope in the document." }, "analysisId": { "type": "string", "minLength": 1, "maxLength": 128, "description": "Opaque identifier; must be unique within its scope in the document." } }, "required": [ "sourceTableId", "analysisId" ], "additionalProperties": false }, "GraphDocument": { "type": "object", "properties": { "variantId": { "$ref": "#/definitions/GraphVariantId" }, "plot": { "allOf": [ { "$ref": "#/definitions/PlotConfig" } ] }, "activePresetId": { "allOf": [ { "$ref": "#/definitions/ThemePresetId" } ] }, "applyPresetNonColor": { "type": "boolean" }, "styleOverrides": { "allOf": [ { "$ref": "#/definitions/UserStyleOverrides" } ] }, "graphSettingsOverride": { "type": "object", "properties": { "direction": { "type": "string", "enum": [ "vertical", "horizontal" ] }, "baseline": { "type": "string", "enum": [ "automatic", "manual", "hidden" ] }, "baselineY": { "type": "number" }, "barWidthRatio": { "type": "number", "minimum": 0, "maximum": 1 }, "groupGapRatio": { "type": "number", "minimum": 0 }, "seriesGapRatio": { "type": "number", "minimum": 0 }, "columnGapRatio": { "type": "number", "minimum": 0 }, "firstGapRatio": { "type": "number", "minimum": 0 }, "lastGapRatio": { "type": "number", "minimum": 0 }, "scatterAppearance": { "type": "string", "enum": [ "standard", "classic", "expanded" ] }, "missingValuePolicy": { "type": "string", "enum": [ "gap", "connectAdjacent" ] }, "lineOfIdentity": { "allOf": [ { "$ref": "#/definitions/LineOfIdentityConfig" } ] } }, "additionalProperties": false }, "axesOverrides": { "allOf": [ { "$ref": "#/definitions/AxesOverrides" } ] }, "plotGeometry": { "type": "object", "properties": { "widthPt": { "type": [ "number", "null" ] }, "heightPt": { "type": [ "number", "null" ] } }, "additionalProperties": false }, "dataSetVisibility": { "type": "object", "propertyNames": { "type": "string", "pattern": "^(0|[1-9]\\d*)$" }, "additionalProperties": { "type": "boolean" } }, "elementActivation": { "allOf": [ { "$ref": "#/definitions/ElementActivation" } ] }, "legend": { "allOf": [ { "$ref": "#/definitions/LegendConfig" } ] }, "partsOfWholeBorders": { "allOf": [ { "$ref": "#/definitions/PartsOfWholeBorders" } ] } }, "required": [ "variantId" ], "additionalProperties": false }, "GraphVariantId": { "type": "string", "enum": [ "scatter", "line", "xy-line-only", "xy-spikes", "xy-area", "xy-points-error", "xy-points-line-error", "xy-individual-replicates", "xy-repeated-measures", "xy-replicates-mean-line", "xy-line-error", "xy-spikes-error", "xy-area-error", "column-scatter-only", "scatter-bar", "column-before-after", "column-floating-bars", "column-box-whiskers", "column-violin", "bar", "column-mean-error", "column-mean-error-connected", "grouped-interleaved-scatter", "grouped-separated-scatter", "grouped-interleaved-scatter-bar", "grouped-separated-scatter-bar", "grouped-superimposed-scatter", "grouped-rm-across-row", "grouped-rm-in-subcol", "grouped-interleaved-bars", "grouped-separated-bars", "grouped-stacked-bars", "grouped-interleaved-symbols", "grouped-separated-symbols", "grouped-superimposed-symbols", "grouped-superimposed-symbols-line", "grouped-interleaved-low-high", "grouped-separated-low-high", "grouped-interleaved-box", "grouped-separated-box", "grouped-interleaved-violin", "grouped-separated-violin", "grouped-heat-map", "contingency-interleaved-bar", "contingency-separated-bar", "contingency-stacked-bar", "nested-scatter", "nested-scatter-bar", "nested-bar", "nested-low-high", "nested-box", "nested-violin", "survival-staircase-ticks", "survival-point-to-point", "survival-point-to-point-eb", "survival-staircase-points", "parts-pie", "parts-donut", "parts-slices", "parts-dot-plot", "mv-bubble", "mv-scatter", "mv-volcano", "mv-forest" ], "description": "Graph variant id from the PivoGraph graph registry." }, "PlotConfig": { "oneOf": [ { "type": "object", "properties": { "family": { "type": "string", "const": "xy" }, "options": { "type": "object", "properties": { "center": { "type": "string", "enum": [ "mean", "meanError", "geoMean", "geoMeanError", "median", "medianError", "eachReplicate" ] }, "error": { "type": "string", "enum": [ "sd", "sem", "ci95", "range", "geoCi95", "geoSd" ] }, "connectCenter": { "type": "string", "enum": [ "mean", "median" ] }, "seriesStackOrder": { "type": "string", "enum": [ "earlierOnTop", "laterOnTop" ] } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "column" }, "options": { "type": "object", "properties": { "mode": { "type": "string", "enum": [ "mean", "meanWithSd", "meanWithSem", "meanWithCi95", "meanWithRange", "geoMean", "geoMeanWithCi95", "geoMeanWithGeoSd", "median", "medianWithCi95", "medianWithRange", "medianWithIqr", "symbolsAndLines", "arrows", "lineAtMean", "lineAtMedian", "noLine", "minToMax", "tukey", "p10_90", "p5_95", "p2_5_97_5", "p1_99", "violinOnly" ] }, "flipXY": { "type": "boolean" }, "showTruncatedViolin": { "type": "boolean" }, "pointLayout": { "type": "string", "enum": [ "scatter", "aligned" ] } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "grouped" }, "options": { "$ref": "#/definitions/GroupedPlotOptions" } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "contingency" }, "options": { "type": "object", "properties": { "flipXY": { "type": "boolean" } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "nested" }, "options": { "type": "object", "properties": { "mode": { "type": "string", "enum": [ "mean", "meanWithSd", "meanWithSem", "meanWithCi95", "meanWithRange", "geoMean", "geoMeanWithCi95", "geoMeanWithGeoSd", "median", "medianWithCi95", "medianWithRange", "medianWithIqr", "symbolsAndLines", "arrows", "lineAtMean", "lineAtMedian", "noLine", "minToMax", "tukey", "p10_90", "p5_95", "p2_5_97_5", "p1_99", "violinOnly" ] }, "showTruncatedViolin": { "type": "boolean" }, "pointLayout": { "type": "string", "enum": [ "scatter", "aligned" ] }, "hideOuterFrame": { "type": "boolean" } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "survival" }, "options": { "type": "object", "properties": { "outcome": { "type": "string", "enum": [ "survival", "death" ] }, "showAs": { "type": "string", "enum": [ "fractions", "percents" ] }, "plotSymbolsAt": { "type": "string", "enum": [ "all", "censoredOnly" ] }, "errorBars": { "type": "string", "enum": [ "none", "se", "ci95" ] }, "showNumberAtRisk": { "type": "boolean" }, "showCumulativeCensored": { "type": "boolean" } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "partsOfWhole" }, "options": { "type": "object", "properties": { "dataSetIndex": { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, "orientation": { "type": "string", "enum": [ "horizontal", "vertical" ] }, "reverseOrder": { "type": "boolean" }, "donutHoleRatio": { "type": "number", "minimum": 0, "maximum": 1 }, "graphicSizePt": { "type": "number", "minimum": 0 }, "showTotal": { "type": "boolean" }, "totalPrefix": { "anyOf": [ { "type": "string", "maxLength": 300 }, { "type": "null" } ] }, "totalSuffix": { "type": "string", "maxLength": 300 }, "totalFontSize": { "type": "number", "minimum": 0 } }, "additionalProperties": false } }, "required": [ "family", "options" ], "additionalProperties": false }, { "type": "object", "properties": { "family": { "type": "string", "const": "multipleVariables" }, "options": { "$ref": "#/definitions/MultipleVariablesPlotOptions" } }, "required": [ "family", "options" ], "additionalProperties": false } ] }, "GroupedPlotOptions": { "type": "object", "properties": { "mode": { "type": "string", "enum": [ "mean", "meanWithSd", "meanWithSem", "meanWithCi95", "meanWithRange", "geoMean", "geoMeanWithCi95", "geoMeanWithGeoSd", "median", "medianWithCi95", "medianWithRange", "medianWithIqr", "grandMean", "grandMedian", "symbolsAndLines", "arrows", "aligned", "lineAtMean", "lineAtMedian", "noLine", "minToMax", "tukey", "p10_90", "p5_95", "p2_5_97_5", "p1_99", "violinOnly" ] }, "flipXY": { "type": "boolean" }, "showTruncatedViolin": { "type": "boolean" }, "pointLayout": { "type": "string", "enum": [ "scatter", "aligned" ] }, "seriesAlign": { "type": "string", "enum": [ "aligned", "staggered" ] }, "heatMap": { "type": "object", "properties": { "aggregation": { "type": "string", "enum": [ "mean", "median" ] }, "colormap": { "type": "string", "enum": [ "sequential", "diverging", "grayscale" ] }, "reverse": { "type": "boolean" }, "domainMin": { "type": [ "number", "null" ] }, "domainMax": { "type": [ "number", "null" ] } }, "additionalProperties": false } }, "additionalProperties": false }, "MultipleVariablesPlotOptions": { "type": "object", "properties": { "kind": { "type": "string", "enum": [ "bubble", "scatter", "volcano", "forest" ] }, "mapping": { "$ref": "#/definitions/VariableMapping" }, "maxBubbleSize": { "type": "number", "minimum": 0 }, "volcano": { "type": "object", "properties": { "log2FcCutoff": { "type": "number", "minimum": 0 }, "pCutoff": { "type": "number", "exclusiveMinimum": 0, "maximum": 1 }, "yIsNegLog10": { "type": "boolean" }, "maxLabels": { "type": "integer", "minimum": 0, "maximum": 9007199254740991 } }, "additionalProperties": false }, "forest": { "type": "object", "properties": { "referenceValue": { "type": "number" } }, "additionalProperties": false } }, "required": [ "kind", "mapping" ], "additionalProperties": false }, "VariableMapping": { "type": "object", "properties": { "x": { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, "y": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "size": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "color": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "shape": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "label": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "lower": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] }, "upper": { "anyOf": [ { "type": "integer", "minimum": 0, "maximum": 9007199254740991 }, { "type": "null" } ] } }, "required": [ "x" ], "additionalProperties": false }, "ThemePresetId": { "type": "string", "enum": [ "modern", "classic", "floral", "starry" ], "description": "Built-in theme preset id." }, "UserStyleOverrides": { "type": "object", "properties": { "global": { "allOf": [ { "$ref": "#/definitions/ElementOverrideSet" } ] }, "perDataSet": { "type": "object", "propertyNames": { "type": "string" }, "additionalProperties": { "$ref": "#/definitions/ElementOverrideSet" } }, "perPoint": { "type": "object", "propertyNames": { "type": "string" }, 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"borderColor": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "borderWidth": { "type": "number", "minimum": 0 }, "fillPattern": { "allOf": [ { "$ref": "#/definitions/PatternRef" } ] }, "patternColor": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "smoothing": { "type": "string", "enum": [ "low", "medium", "high" ] } }, "additionalProperties": false }, "symbol": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "shape": { "allOf": [ { "$ref": "#/definitions/SymbolShapeRef" } ] }, "size": { "type": "number", "minimum": 0 }, "borderColor": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "borderThickness": { "type": "number", "minimum": 0 }, "symbolVisibility": { "type": "string", "enum": [ "all", "censoredOnly" ] } }, "additionalProperties": false }, "errorBar": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "capStyle": { "type": "string", "enum": [ "wideT", "narrowT", "I" ] }, "direction": { "type": "string", "enum": [ "above", "below", "both" ] }, "thickness": { "type": "number", "minimum": 0 } }, "additionalProperties": false }, "summaryLine": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "thickness": { "type": "number", "minimum": 0 }, "dashStyle": { "allOf": [ { "$ref": "#/definitions/LineDashStyle" } ] } }, "additionalProperties": false }, "line": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "thickness": { "type": "number", "minimum": 0 }, "dashStyle": { "allOf": [ { "$ref": "#/definitions/LineDashStyle" } ] }, "drawOrder": { "type": "string", "enum": [ "underneathErrorBars", "onTopOfErrorBars" ] }, "connect": { "type": "string", "enum": [ "straight", "staircase", "spline" ] }, "startAtOrigin": { "type": "boolean" }, "leaveGapAtSymbols": { "type": "boolean" }, "gapAtAxisBreaks": { "type": "boolean" } }, "additionalProperties": false }, "quartile": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "thickness": { "type": "number", "minimum": 0 }, "dashStyle": { "allOf": [ { "$ref": "#/definitions/LineDashStyle" } ] } }, "additionalProperties": false }, "median": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "thickness": { "type": "number", "minimum": 0 }, "dashStyle": { "allOf": [ { "$ref": "#/definitions/LineDashStyle" } ] }, "drawOrder": { "type": "string", "enum": [ "underneath", "onTop" ] } }, "additionalProperties": false }, "barsSpikesDroplines": { "type": "object", "properties": { "color": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "widthRatio": { "type": "number", "minimum": 0, "maximum": 1 }, "borderColor": { "allOf": [ { "$ref": "#/definitions/ColorRef" } ] }, "borderThickness": { "type": "number", "minimum": 0 }, "fillPattern": { "allOf": [ { "$ref": "#/definitions/PatternRef" } ] }, 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"y1": { "type": "number" }, "x2": { "type": "number" }, "y2": { "type": "number" }, "x3": { "type": "number" }, "y3": { "type": "number" }, "lineWidth": { "type": "number", "minimum": 0 }, "dashStyle": { "allOf": [ { "$ref": "#/definitions/LineDashStyle" } ] }, "lineColor": { "allOf": [ { "$ref": "#/definitions/ThemeColor" } ] }, "text": { "type": "string", "maxLength": 5000 }, "bold": { "type": "boolean" }, "italic": { "type": "boolean" }, "textRotation": { "type": "number" }, "labelSide": { "type": "string", "enum": [ "primary", "opposite" ] }, "textGap": { "type": "number" }, "arrowSize": { "type": "string", "enum": [ "small", "medium", "large" ] }, "fontSize": { "type": "number", "minimum": 0 }, "fontFamily": { "type": "string", "maxLength": 300 }, "textColor": { "allOf": [ { "$ref": "#/definitions/ThemeColor" } ] } }, "required": [ "type", "shape", "x1", "y1", "x2", "y2" ], "additionalProperties": false } ] }, "TitlesState": { "type": "object", "properties": { "graph": { "allOf": 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